The COVID-19 Multi-omic Blood Atlas (COMBAT) has identified blood hallmarks of COVID-19 involving particular immune cell populations and their development, components of innate and adaptive immunity, and connectivity with the inflammatory response.
A multi-disciplinary, cross-divisional collaborative team led by the University of Oxford has published a study defining hallmarks of COVID-19 disease severity. The team, led by Professor Julian Knight at the Wellcome Centre for Human Genetics, included over 200 researchers across 10 MSD and MPLS Departments, clinicians, and nurses at OUH NHS FT and collaborators across the country and performed multiple ‘omics analyses on the blood of patients with varying COVID-19 severity and compared with severe influenza patients, sepsis patients and healthy volunteers.
Hallmarks of illness severity involved cells, their inflammatory mediators and networks as potential targets, including progenitor cells and specific myeloid and lymphocyte subsets, features of the immune repertoire, acute phase response, metabolism and coagulation. Persisting immune activation involving p38MAPK/AP- 1 was a specific feature of COVID-19. The plasma proteome enabled sub-phenotyping into patient clusters, predictive of severity and outcome. Tensor and matrix decomposition of the overall dataset revealed feature groupings linked with disease severity and specificity. The systems-based integrative approach and blood atlas will inform future drug development, clinical trial design and personalised medicine approaches for COVID-19.
Professor Julian Knight said: ‘This has been possible through an extraordinary team from different disciplines working collaboratively to address an unprecedented health challenge. The work has advanced our understanding of why a small minority of those infected with SARS-CoV-2 develop severe illness, and provides opportunities to identify therapeutic targets and personalise care for patients. An in-depth multi-omic approach revealed the nature of underlying immune dysfunction, the extent to which this is specific to COVID-19 and how this varies between people.’
Stephen Sansom, Associate Professor, Luke Jostins, Sir Henry Dale Fellow, Irina Udalova, Professor of Molecular Immunology and Claudia Monaco, Professor of Cardiovascular Inflammation, all from the Kennedy Institute of Rheumatology provided their expertise in genomics, genetics and myeloid cell immunology to the COMBAT project.
Stephen Sansom said: “It was a privilege to participate in this extraordinary study that demonstrates the strength and depth of immunology and computational research at the University of Oxford. The integrative, cross-disease and team-science based approach provides a powerful new template for future investigations of cohorts of patients with immune mediated inflammatory diseases.”
Brian Marsden, Associate Professor, Research Informatics at the Kennedy Institute said: “The COMBAT programme was the largest scale project of its kind at the University. The Kennedy Institute’s role in data management for the project demonstrated the power of having all the data in one location and provisioning research capabilities across the data that allows much more rapid analysis than having individual teams working independently.”